PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_7747_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C3H
Protein Properties Length: 281aa    MW: 32168.4 Da    PI: 8.4105
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_7747_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH48.91e-15207232126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    +ktelC+ +++tGtC+yG+ C+FaHg
  Neem_7747_f_1 207 WKTELCNKWQETGTCPYGEYCQFAHG 232
                    8************************8 PP

2zf-CCCH19.71.5e-06245270126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    ykte Cr  + +  C+yG rC+F H+
  Neem_7747_f_1 245 YKTEVCRMVLLGAMCPYGHRCHFRHS 270
                    9**********88**********998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.0E-18203239IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-11204238IPR000571Zinc finger, CCCH-type
SMARTSM003568.8E-9206233IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.028206234IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-12207232IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-12240273IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-9240275IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-5244271IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.112244272IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MEKEREASSP SNPKTSTMAT ATPCSSPSPD FSSMYYSIFP PRSSLSPTFL TEDQHRRATE  60
DRLHQARLIL EYQQLCDHYD LCFSRLQAIT GELETLRQEN ADLRLANAGL LKLLTGSFHR  120
QTEEISSGFS PKSMMEPNRF AKIDVWERDS LPKSISVRSN GYVKAKQNNA SSGPSRQRVQ  180
RVHVAADNKR EKEAKAMEME VCNQGTWKTE LCNKWQETGT CPYGEYCQFA HGISELRPVI  240
RHPKYKTEVC RMVLLGAMCP YGHRCHFRHS LTDQEMNQIP R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A7e-23207270467Butyrate response factor 2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006430713.11e-129hypothetical protein CICLE_v10013897mg
SwissprotQ9C9N32e-75C3H14_ARATH; Zinc finger CCCH domain-containing protein 14
TrEMBLV4S8X01e-129V4S8X0_9R
STRINGPOPTR_0005s15100.13e-90(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106232533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.15e-65C3H family protein